rs32345114 SNP Detail

Summary

• ID
  rs32345114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73978056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTGTCA GTTCACTGTC
  ACCTGTAACT CCAGTTCCAG GAAATCATCC AGTATCCTCT CCTGACCTCA TCAGGCACCA
  GGTACACACA CAGTGCACAC ACATACATGC AGATAGAGCA CTTACCCACA TAAAATAAAA
  ATCAATTTCA AAATAGACTT ACGAGGGAAA AGTATAATTA TTCCCTTTTG CATATTTGCA
  Y
  TTATATTCAG TATATGTAAT CTCCATTAAA GACAGTATAA TAATCTGACA GTTTGAGATA
  TATAAACACA AATTATTGGA AATACGATAT TTCTTTTTTT TAAAAAAATA TATACATACA
  TTTATTTATT TATTTATATG TGAGTACACT GTAGCTGTCT CCAAATGCAC CAGTAGAGGG
  CGTCAGATCT CATTACGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47155824	NES11245661	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	T	T	C		T	T	C	T		C
ss137891009	ENSMUSSNP6479306	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss324099308	CHEV_12_75032269	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32345114					SNP	C	C	C	T	C	C	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47155824	NES11245661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73978056 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	166 bp proximal
Tssr113854	transcription start site region 113854	571 bp downstream
Tssr113855	transcription start site region 113855	278 bp upstream