rs32345123 SNP Detail

Summary

• ID
  rs32345123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73978966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCAGAT CCTCTGGAAA
  TAGGGTTACA AATGGTTGTA AGCTGCCTTG TGAGTGCTAG GAATCAGATC TAGGTCCTCT
  GGGAAAAGCA GTCAGTAAGC TTAACCACTG TCTCATCTCT AGCACCCTAC CTTCACAATG
  TTGTGGGGTT GTTTTGTTTT GTTTTGTTTT GTTTTAGAAT ACCTCATTAT CTCATAATGT
  M
  TTAACTGCTA TGCCATCTTT CCAGCTCCCC TTACCTCTTT CTATTTTAAA AAGGTAACTT
  TATTTTCTTA CTCATATTCA GGTGCTTCAC TGCACGGGCC ATATTCATGT CTATGATACC
  AACAGTAACC AACCTCAGTG TGGGTACAAG AAACCACCCA TGACGTGCTT GGTGCTGATT
  TGTGAACCCA TTCCTCATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47155833	NES11245571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32345123					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47155833	NES11245571	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73978966 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	723 bp distal
Tssr113854	transcription start site region 113854	1481 bp downstream
Tssr113855	transcription start site region 113855	621 bp downstream