rs32350267 SNP Detail

Summary

• ID
  rs32350267
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:39598708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCTGAAGGT TTTCTTTAAA CAAAAATCTG CCAGTACCAT TAAAAATAGT AATTCTTAAA
  AAAAAAAATA GTAGTTCTTA ATTGTGAAAC ACTCTAGTTC AGTTTGTCAT TCAACCACAA
  ATTAAAACTC ACTGACCGAG AAGAAATTGT CCAAAAACAA GGAAGAAACT TCAGTTTTGT
  TGGGGATGTT TTAACATGTT GCTTAGGAGA AAAGTGGACA AAATAACAAC CCCAATGAGG
  AGAGCAAGTA ATGTGCACAG CTAACACATC TGCACAGGTC CAGCATGAGC TCAGTGCAGC
  W
  GTCAGCACCC CCCCCTCTCT TCTGTGCACT CTTGAGCATC ACTCTGAAAC CTGTTCTAAA
  ACCAGCCTAA AACTCTTCCA ATGCTCGTGT GCAGAACATG ATCAACCTAT ACTGACCTCA
  GTTCACTAAA TGCCCTCGTG CTGATCGTTT ATACACACTG ACAGAATTTA GCCAGGCGTG
  CCTCGGGGAA CTGTTATTAT TGTGGTACTC ATTTTATTTC CTCATCAGAG GTATCAAGAA
  TTCAATCTAC TAAAAAGTAC CATATACATA GTAAAATATT AAAAAAAGAA GCTAATACAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45137068	mCV25395737	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss148969080	ENSMUSSNP3240710	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32350267					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39598708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf149	ring finger protein 149			Intron
				Noncoding-Transcript-Variant
Rr409900	regulatory region 409900			312 bp distal
Tssr11387	transcription start site region 11387			1798 bp upstream
Tssr11388	transcription start site region 11388			1302 bp upstream
Tssr11389	transcription start site region 11389			1247 bp upstream
Tssr11390	transcription start site region 11390			684 bp upstream
Tssr11391	transcription start site region 11391			654 bp upstream