rs32352140 SNP Detail

Summary

• ID
  rs32352140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73977384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACCAGC ACAGATGAAT
  AATTAATCCT GTGAAGTGTG GACTCTCCTC CCACAGTCCA GGGAGTCACT GCCGTCTTAC
  ACACACTCTC CCTGGATGGA GCTGTCAGAC CTACTGACAT GCTGGAGTAG GTGAAGAGGG
  AGCAAATCAT GGTTGTGTTA ATGCTGAGAG CCTTGCTTTG ATGCTCTCAT CCTAACAAAT
  Y
  TCTATGTTTA GCTGTGACTT AAAACTCGGT TTCTTGCTTT CGTTAGGCCC AGTGAGAAAA
  GGGAAAGAAC TAAACACACA GCGGAGCTTT TTTCTCAGAA TGAAGTGCAC CCTAACAAGC
  CGGGGGAGGA CGATGAACAT CAAGTCAGCA ACGTGGAAGG TACGCAAGCT GAGCGTGCAC
  TTGATTATAG ATAAATAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47155821	NES11245677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32352140					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47155821	NES11245677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73977384 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	838 bp proximal
Tssr113854	transcription start site region 113854	89 bp upstream
Tssr113855	transcription start site region 113855	950 bp upstream