GTTTA TTCTGGTCAA GGCCATGACC Y AAGTGTGACT GGGCTGTGTT TATTC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39393804 | mCV25124489 | ABI | CRAMUS_MOUSE | f | SNP | T | T | C | C | |||||||||||||
ss49442662 | NES12613807 | PERLEGEN | MM_PANEL2 | f | SNP | T | C | T | T | C | C | T | T | T | T | T | T | C | ||||
ss147475706 | ENSMUSSNP6490498 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | |||||||||||||||
ss324916626 | CHEV_15_32283985 | CHEVERUD | SCREENING_POP | f | SNP | T | T | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs32360358 | SNP | T | T | C | T | T | C | C | C | T | T | T | T | T | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49442662 | NES12613807 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr15:32354376 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr313079 | regulatory region 313079 | within coordinates | ||||||
Sema5a | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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