rs32375399 SNP Detail

Summary

• ID
  rs32375399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA ACCCTTGAGT TCCTCTGTCC
  Y
  GGCTGCCCAT CTGCAGCCAG ATGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46137677	mCV25394707	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148682389	ENSMUSSNP5242676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322135235	CHEV_7_31340319	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32375399					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1766 bp distal
Cpgi18810	CpG island 18810	703 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	141 bp downstream
Tssr65781	transcription start site region 65781	1991 bp downstream
Tssr65782	transcription start site region 65782	506 bp downstream
Tssr65783	transcription start site region 65783	440 bp downstream
Tssr65784	transcription start site region 65784	416 bp downstream
Tssr65785	transcription start site region 65785	361 bp downstream
Tssr65786	transcription start site region 65786	348 bp downstream
Tssr65787	transcription start site region 65787	253 bp downstream
Tssr71789	transcription start site region 71789	612 bp upstream
Tssr71790	transcription start site region 71790	470 bp upstream