rs32377290 SNP Detail

Summary

• ID
  rs32377290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8254083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTGTC AAGGAGGATC
  GATGTTCCAG AGATAAGATC CAGAGTGCCC GCTGCCTGGC GCCTGACTTC GGCCTCCATG
  TCAGCAGATG CCCACTTCTT TGTTCTTTGT ATAATTCTCC CTCAACCCCT CCCATATTCC
  CTGCAATGTA TGCTTTAAAA AGAAGGCACC TCAGCCTAAT AAACAAGACC TTGATAGGTA
  Y
  CCTTCCTGGT CTCCTCTCTT CTTTTTCTTC CTTCCATCTC CTTCCAGGTT TGCGGTCTCC
  CTCGTACACA CGAATAACTG AATCTCGCGG GACGGGACAC CTTGGCACCA TGCAGTAACT
  TTATTCCTTT TTCTAATAGG TACTTATTTG ACAAGTTCAT AAATGCGTAC GGTTTATAAC
  CTGTACTGCT TTTTCTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48158930	NES11820501	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	C		T	C	C		C
ss48159128	NES11819250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C			C	C		C
ss321460791	CHEV_5_8204083	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32377290					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48158930	NES11820501	PERLEGEN	MM_PANEL	f	SNP	C/T
ss48159128	NES11819250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8254083 () rs orientation: forward

Symbol	Name	Function Class
Adam22	a disintegrin and metallopeptidase domain 22	within coordinates
Gm55253	predicted gene, 55253	108 bp upstream