rs32379431 SNP Detail

Summary

• ID
  rs32379431
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45432852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT AAAGAGCTGG ACATCATAGC
  S
  GGCTTCTTCC AGCAGTCCTG ACTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46138813	mCV24380717	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss149144997	ENSMUSSNP2052431	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs32379431					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45432852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	67 bp proximal
Cpgi19089	CpG island 19089	1955 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	530 bp proximal
Rr646577	regulatory region 646577	1231 bp proximal
Tssr66636	transcription start site region 66636	258 bp upstream
Tssr66637	transcription start site region 66637	455 bp upstream
Tssr66638	transcription start site region 66638	1903 bp upstream
Tssr72472	transcription start site region 72472	1598 bp downstream