rs32380438 SNP Detail

Summary

• ID
  rs32380438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150322882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA GACAAAAGAG TATGGTTGAG
  R
  AATAGTAAGG TTTTGTAACA TGGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45640637	mCV24222717	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss46712637	NES10999453	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A		A	A	A	G		G	A	A	A		A
ss148050718	ENSMUSSNP6283842	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321428743	CHEV_4_149612534	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32380438					SNP	G	A	A	A	A	A	G	A	A	A	G	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712637	NES10999453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150322882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	625 bp distal
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	820 bp downstream
Rr398880	regulatory region 398880	1821 bp upstream
Rr605239	regulatory region 605239	1463 bp distal
Rr605240	regulatory region 605240	1805 bp proximal
Rr605241	regulatory region 605241	1843 bp proximal
Rr605242	regulatory region 605242	1896 bp proximal
Tssr40390	transcription start site region 40390	1658 bp downstream
Tssr40391	transcription start site region 40391	1645 bp downstream
Tssr40392	transcription start site region 40392	1629 bp downstream
Tssr40393	transcription start site region 40393	1616 bp downstream
Tssr40394	transcription start site region 40394	1606 bp downstream
Tssr40395	transcription start site region 40395	1217 bp downstream
Tssr40396	transcription start site region 40396	1186 bp downstream
Tssr40397	transcription start site region 40397	1083 bp downstream
Tssr40398	transcription start site region 40398	720 bp downstream
Tssr40399	transcription start site region 40399	688 bp downstream