rs32382530 SNP Detail

Summary

• ID
  rs32382530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:85124911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATATTTAA CAAGAAACGA CTTTATTGAT AAACCGTAAA
  ATACTTTTTG CGTAACCATT TAGCTTTAAA GATCCTTATC CTAAGCTAAC CTTAATTGTG
  Y
  GGCTTCTGTA ATTTCTTGTT TTTTAAAAAC ATTACTTTTA TCTTTTTTTA CAATCCAGCC
  ACTCCCTTCC CTCTGGGTCC CCCCTCCCAC AGTTCCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45641522	mCV22286168	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss146897505	ENSMUSSNP6374730	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	C
ss321193473	CHEV_4_84852578	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32382530					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85124911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	372 bp distal
Rr376767	regulatory region 376767	1087 bp upstream
Rr594659	regulatory region 594659	1129 bp distal
Rr594660	regulatory region 594660	60 bp distal
Rr594661	regulatory region 594661	992 bp distal
Rr594662	regulatory region 594662	1038 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	Intron
Tssr37705	transcription start site region 37705	1543 bp downstream
Tssr37706	transcription start site region 37706	1525 bp downstream
Tssr37707	transcription start site region 37707	1482 bp downstream
Tssr37708	transcription start site region 37708	1446 bp downstream
Tssr37709	transcription start site region 37709	1179 bp downstream
Tssr37710	transcription start site region 37710	1158 bp downstream
Tssr37711	transcription start site region 37711	1152 bp downstream
Tssr37712	transcription start site region 37712	989 bp downstream