rs32382715 SNP Detail

Summary

• ID
  rs32382715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135303551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG TTACAGGTGG AAAGTCTCAA
  R
  GAAGAAAGTC AATGTACCTT TACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45140784	mCV23630692	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145532360	ENSMUSSNP4283777	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss319989533	CHEV_1_137272390	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32382715					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135303551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	337 bp distal
Rr12587	regulatory region 12587	151 bp distal
Rr28596	regulatory region 28596	150 bp distal
Shisa4	shisa family member 4	576 bp upstream
Tssr13846	transcription start site region 13846	1849 bp upstream
Tssr13847	transcription start site region 13847	1379 bp upstream
Tssr13848	transcription start site region 13848	880 bp upstream
Tssr13849	transcription start site region 13849	867 bp upstream
Tssr13850	transcription start site region 13850	715 bp upstream
Tssr13851	transcription start site region 13851	703 bp upstream
Tssr13852	transcription start site region 13852	585 bp upstream
Tssr13853	transcription start site region 13853	568 bp upstream
Tssr13854	transcription start site region 13854	549 bp upstream
Tssr13855	transcription start site region 13855	536 bp upstream
Tssr13856	transcription start site region 13856	528 bp upstream