rs32383115 SNP Detail

Summary

• ID
  rs32383115
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45015394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTGCGG AGGGCAGGGG
  GGAGCTGTTA AAGTAGGTGC TAAGTGGGGA GGTGGGGGCA AAGGCTAGGA AACTGGATTC
  CCCGGGTGCT GAATAAGGTG ACAGTGATTA GTCAGGGCCA GCAGATATAT GGACACTAAC
  AGCTTTTCAG AACCAGGTGG GAGCGGGAGG CTCCATGCCA AGGTTTCTAA GTGGCCTGGG
  M
  AGGGACATTC ACAAGCTCTA TGTAAGTGAA GCAGCTAGAG TCCCAGAAAG CTAGAGTGCC
  TAAAGATGGG CCTGAGAGCC CTGCGGCCCA TCTGGGAGGG GGGCGCCGGG GAACCCCAGG
  TCAAAGGCGC GGTGAGGGGG AGGAATCCCC ACACCACCTG CACCCCCCTC CTCCCTAGCG
  GCCGTGGAAG GAGATGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46138480	mCV25291011	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
ss61003690	NES16117376	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	C	C	A	C
ss149134081	ENSMUSSNP4091855	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32383115					SNP	C	A	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003690	NES16117376	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45015394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	73 bp proximal
Gm71276	predicted gene, 71276	1459 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	1921 bp downstream
Mtag2	metastasis associated gene 2	191 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	973 bp upstream
Rr646419	regulatory region 646419	within coordinates
Rr646420	regulatory region 646420	48 bp proximal
Rr646421	regulatory region 646421	734 bp proximal
Rr646422	regulatory region 646422	1717 bp proximal
Tssr72376	transcription start site region 72376	798 bp downstream