rs32383415 SNP Detail

Summary

• ID
  rs32383415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43058522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGCTAAT CAAAGATGTT CAGTGGGGAG ACTCAACAAA
  CTATTTCTTC CGGATGGAGA GAGGATTTGA GAGATTCAGT TTCAAGGAGG AGTTCAGGCT
  R
  CAAGTGGAAG GTAAGAGTTG TAGACATAGC AGGGAACCTT GGTCTCTCAC TGGGGGAGGG
  ACAGTGGAAG ATAAACTGTG ATGCAAAGAA GACTACTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46139086	mCV22794629	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss51478349	NES13970872	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A	G	A	G	A
ss149071761	ENSMUSSNP4178552	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32383415					SNP	A	G	A	A	A	A	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478349	NES13970872	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43058522 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	884 bp distal
Rr645954	regulatory region 645954	524 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	887 bp downstream
Tssr65985	transcription start site region 65985	878 bp downstream
Tssr65986	transcription start site region 65986	842 bp downstream
Tssr65987	transcription start site region 65987	825 bp downstream
Tssr65988	transcription start site region 65988	813 bp downstream
Tssr65989	transcription start site region 65989	580 bp downstream
Tssr65990	transcription start site region 65990	559 bp downstream
Tssr65991	transcription start site region 65991	154 bp upstream
Tssr65992	transcription start site region 65992	165 bp upstream
Tssr65993	transcription start site region 65993	198 bp upstream
Tssr65994	transcription start site region 65994	311 bp upstream