rs32390563 SNP Detail

Summary

• ID
  rs32390563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43427932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC ACGGTGCCCC CAGGCAAAGC
  R
  CGAGCGCCCA CCCCCACCCC ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45642456	mCV23167272	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146239172	ENSMUSSNP532583	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
ss321097750	CHEV_4_43440804	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32390563					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43427932 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	within coordinates
Cpgi14187	CpG island 14187	1930 bp distal
Cpgi14188	CpG island 14188	186 bp distal
Rr590976	regulatory region 590976	1451 bp distal
Rr590977	regulatory region 590977	1147 bp proximal
Rusc2	RUN and SH3 domain containing 2	844 bp downstream
Tssr41408	transcription start site region 41408	1139 bp downstream
Tssr41409	transcription start site region 41409	1196 bp downstream