rs32391290 SNP Detail

Summary

• ID
  rs32391290
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4876025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTTATGA TCTTGATTAT CATAATTTCA
  CAGGTATAGA CTTTGCTGCA ACTTGACCAG CATTTTGTCA ATCATATTCA ATAGTGTTTT
  ACAAATCTTA TAGTTTTAAA TCTGTATTGT AATGTTTTGT ATTGTTACAC AATTAACCAG
  M
  TTTTGCTTAT ATCTAGAAAT ATACTCTTtg ttgaggccta cccctcccct agcatagcta
  tagccatttt gttccatgcc tgccagctat ttcatattgt tgctataaca tgccagctag
  tcattgacac tgaaaaataa ctggacttag                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45142192	mCV23845270	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss319612482	CHEV_1_4795883	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32391290					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4876025 () rs orientation: forward

Symbol	Name	Function Class
A930006A01Rik	RIKEN cDNA A930006A01 gene	1709 bp downstream
Cpgi9	CpG island 9	1639 bp proximal
Gm70766	predicted gene, 70766	1462 bp downstream
Rr407434	regulatory region 407434	1473 bp proximal
Rr407435	regulatory region 407435	1918 bp proximal
Tssr5801	transcription start site region 5801	1840 bp upstream
Tssr10888	transcription start site region 10888	1858 bp downstream
Tssr10889	transcription start site region 10889	1916 bp downstream