rs32391849 SNP Detail

Summary

• ID
  rs32391849
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19060880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATCTGAG ATTCTTCAGT
  GTTACCAATA GATCCCTTCT GGCAGGCTTA ATTGTATTGT GTTTGTATTC ACAAGACTTT
  CCTCAAGAAA TTGGCCACTA AACACTTTCT CATAAAGGTC AGGACTGGCA TCATCTGAGG
  ATGACTTACA TTATTGATTT TTTGATTGCT TGTCCTCAGT GGGAACACTA TGTAGACCAA
  K
  GGTTCCTAAT CTATGTGTTC AAACTCTAAT AGAAAGCACT TACCCAAAAT CCTGCATATG
  ACATACATTA TGATTCATTA TAGTAGTAAA TTACAGGTAT AAGATTGCAA GAAAATCATT
  GATGTTGTGG ATCAATATGA CATTTGTGAA TGTATTAAAG AATCTCATCA TTAGAAAGGC
  TAGGAACTAC TGATGTAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48160129	NES12105087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32391849					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48160129	NES12105087	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19060880 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	1395 bp upstream
Gm35545	predicted gene, 35545	796 bp downstream
Gm56600	predicted gene, 56600	within coordinates
Iglv3	immunoglobulin lambda variable 3	451 bp upstream
Rr512770	regulatory region 512770	88 bp distal
Tssr137404	transcription start site region 137404	871 bp downstream
Tssr137405	transcription start site region 137405	846 bp downstream
Tssr140323	transcription start site region 140323	1022 bp upstream
Tssr140324	transcription start site region 140324	420 bp upstream
Tssr140325	transcription start site region 140325	394 bp upstream
Tssr140326	transcription start site region 140326	316 bp upstream