rs32391850 SNP Detail

Summary

• ID
  rs32391850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19060961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGAAAT TGGCCACTAA
  ACACTTTCTC ATAAAGGTCA GGACTGGCAT CATCTGAGGA TGACTTACAT TATTGATTTT
  TTGATTGCTT GTCCTCAGTG GGAACACTAT GTAGACCAAT GGTTCCTAAT CTATGTGTTC
  AAACTCTAAT AGAAAGCACT TACCCAAAAT CCTGCATATG ACATACATTA TGATTCATTA
  Y
  AGTAGTAAAT TACAGGTATA AGATTGCAAG AAAATCATTG ATGTTGTGGA TCAATATGAC
  ATTTGTGAAT GTATTAAAGA ATCTCATCAT TAGAAAGGCT AGGAACTACT GATGTAGAGT
  TTAATTTATG AAAACTTAAT TATTAATGAA TTTTTCTCAC ACAAACTGAA GTCAGAGAAT
  ATACCTTCAT GAATTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48160131	NES12105088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32391850					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48160131	NES12105088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19060961 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	1314 bp upstream
Gm35545	predicted gene, 35545	877 bp downstream
Gm56600	predicted gene, 56600	within coordinates
Iglv3	immunoglobulin lambda variable 3	532 bp upstream
Rr512770	regulatory region 512770	169 bp distal
Tssr137404	transcription start site region 137404	952 bp downstream
Tssr137405	transcription start site region 137405	927 bp downstream
Tssr140323	transcription start site region 140323	1103 bp upstream
Tssr140324	transcription start site region 140324	501 bp upstream
Tssr140325	transcription start site region 140325	475 bp upstream
Tssr140326	transcription start site region 140326	397 bp upstream