rs32392909 SNP Detail

Summary

• ID
  rs32392909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19061627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGTTCAGA AAGGAATGTT CCTAAAATTG AGATAAGAAG
  CTATGCATTA TGCTAGAAGT TATTGGAAAT ATTGGGCAGG AATGAGAAGA ATATCATGAC
  M
  ACTGGGGCTT GCTGAGGTAT GCAATAACTT GAGAATATTT AAAGAAGCTG CCTTATATAG
  ATTCTCTTAA TAAAACACCT CTTCCCCAGG ATCAGGGAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss48160143	NES12105097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32392909					SNP	C	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48160143	NES12105097	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19061627 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	648 bp upstream
Gm35545	predicted gene, 35545	1543 bp downstream
Gm56600	predicted gene, 56600	189 bp downstream
Iglv3	immunoglobulin lambda variable 3	1198 bp upstream
Rr512770	regulatory region 512770	835 bp distal
Tssr137404	transcription start site region 137404	1618 bp downstream
Tssr137405	transcription start site region 137405	1593 bp downstream
Tssr140323	transcription start site region 140323	1769 bp upstream
Tssr140324	transcription start site region 140324	1167 bp upstream
Tssr140325	transcription start site region 140325	1141 bp upstream
Tssr140326	transcription start site region 140326	1063 bp upstream