rs32393346 SNP Detail

Summary

• ID
  rs32393346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19059579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTTG AGTGTCACTG
  GGAAGTCTTA CTAACAGGGA ATGCAGGAGC AACATGGAGA GGATCATACA TACTCAAGAA
  CATTGTGGCT GTCTCAGTGG CTCAGACATT GTGGCTATCT TATATTATTC TATTCCTGGC
  AATAGAAAGT TCCAACCACA CTGTCTCCTT AAATGTACTT ATAGTGAACT TCTTGGCAAA
  Y
  TGCTAGAGTT ATAAAACACT GAGATCATGG AACAAGAAGG CTATCTTAAA ATGAACCGGC
  ATTACTCTAA ATTTTGTTGA GGTAACACTG AGAGCCTCAG ACACAGTGCT GTAATCATAT
  AGGGCAATAG TCTCACCCCT AAGTTGTATA CATACCAGGT TTGACTTTTA CATAGTCATA
  ATTATTATAC AGTAATGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48160105	NES12105064	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32393346					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48160105	NES12105064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19059579 () rs orientation: forward

Symbol	Name	Function Class
Gm35545	predicted gene, 35545	within coordinates
Gm56600	predicted gene, 56600	346 bp upstream
Iglv3	immunoglobulin lambda variable 3	379 bp downstream
Rr512770	regulatory region 512770	767 bp proximal
Tssr137404	transcription start site region 137404	385 bp upstream
Tssr137405	transcription start site region 137405	445 bp upstream
Tssr140323	transcription start site region 140323	275 bp downstream
Tssr140324	transcription start site region 140324	866 bp downstream
Tssr140325	transcription start site region 140325	883 bp downstream
Tssr140326	transcription start site region 140326	978 bp downstream