rs32393364 SNP Detail

Summary

• ID
  rs32393364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188116791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTACCTCA CCCTATACAG CTAAACATGC ATCTACACAT
  TATATATCAA AATGGAATGG AGCATTGAGT CCAAGAGCCA AAAATCACAA AATTATTAGA
  Y
  AAAAGCAGCA TTTAAGATAT TGTACCAAAA GCATAAACAT CTGAAAGGAC ATAAGTGATT
  CTTTGTAAAA TCCAGTCATT TGCATGGTTT TGCCAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45141569	mCV22305167	ABI	CRAMUS_MOUSE	f	SNP		T					T	C
ss60358718	NES15859045	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	T	C		C	T	C		T
ss146473667	ENSMUSSNP3715454	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320187876	CHEV_1_190208473	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32393364					SNP	C	T	T	T	T	T	T	C	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60358718	NES15859045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188116791 () rs orientation: forward

Symbol	Name	Function Class
Rr425688	regulatory region 425688	176 bp proximal
Rr425689	regulatory region 425689	215 bp proximal
Rr425690	regulatory region 425690	296 bp proximal
Rr425691	regulatory region 425691	560 bp proximal
Rr425692	regulatory region 425692	707 bp proximal
Rr425693	regulatory region 425693	799 bp proximal
Rr425694	regulatory region 425694	1185 bp proximal
Tssr10682	transcription start site region 10682	1482 bp downstream
Ush2a	usherin	Intron