rs32393516 SNP Detail

Summary

• ID
  rs32393516
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45016734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTCCACA TCGGGAGGGA
  GGGGCCGCGC GGGCGGAGAG CTGGGGGCGG GACTCATGGT GCAGCGACCA ATAGGCATGC
  AGCGTGCGGC GGCCTGGGAG GGAGGCGGAG CCCGGCAGAG GATGATGTCA CCTGAATCTA
  GTAGCGCGCA GCATGGAACG CGAGTCGCGA CCCCGGGTCC CCACGGCGGC GCGCGTCTCA
  M
  GGGACACGAG GGTTGGGCGG CGGGATAGGA ATTCAACATT CAAGGTGGGA TTTTTTTTTT
  TTAAGACAAG GGCGGCTCCC GGAAGGATGT GCTCGGTTGG AAGGTGAGGC AAGTGGACGA
  CGGGTGGCGA GTGCGTGTTA CTCTGCACCC CTGCGCCCGT CTAGGGTACT GCATGCGCCC
  CACCAACCCG ACTCCTACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46140239	mCV22694493	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32393516					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45016734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm45619	predicted gene 45619	867 bp upstream
Gm71276	predicted gene, 71276	119 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	581 bp downstream
Mtag2	metastasis associated gene 2	within coordinates
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	291 bp upstream
Rr400310	regulatory region 400310	66 bp downstream
Rr646419	regulatory region 646419	1293 bp distal
Rr646420	regulatory region 646420	607 bp distal
Rr646421	regulatory region 646421	19 bp distal
Rr646422	regulatory region 646422	377 bp proximal
Tssr72376	transcription start site region 72376	470 bp upstream