rs32393973 SNP Detail

Summary

• ID
  rs32393973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCACG CACACAGACT
  GGGGAAGCTC TCCCACTAAC ACTAACGAGG CCTTGTGAAG TCAACATCTC AGCCACTGGG
  CTGTTTTCCC TACAGAAAGC AGAGCAGTCA CCTAGGACAC CGCGAGGTGG GTGGGGACAT
  GGCTCAGTGG TAGAGCACCT GAGTGGCTTG TCCAAAGCCA CCCCCCCATT CAACCACCAG
  Y
  ACCTCTTAAA AAAAAAAAAA AAAAAAAGGC AGGATTTTGG CATCATTAGG GAATTTAAAA
  TAAAAGAAGA TTTGTTCCCT GCACTAGAGT TTCCACTTGA CCCAGATCAC CACATGGGCT
  GAATGTTTCC AAAAACAGTA AGAAATACCA TGTAGCTGGG CATAGGGCAC ACGCCTTTAA
  TCCCAGGACT CAGGAGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46140167	mCV25048890	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148471662	ENSMUSSNP4145765	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32393973					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996463 () rs orientation: forward

Symbol	Name	Function Class
Tssr70879	transcription start site region 70879	1836 bp upstream
Tssr70880	transcription start site region 70880	1595 bp upstream
Tssr70881	transcription start site region 70881	1531 bp upstream
Tssr70882	transcription start site region 70882	479 bp upstream
Tssr70883	transcription start site region 70883	1931 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates