rs32394194 SNP Detail

Summary

• ID
  rs32394194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:19060084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTAGAA AAGACCTTTG
  AAGAGAAAAA AAAAAGTTTC TGTCCTGCTT CCTCCTTTAT CTGGCTTACT GTGGTTACAC
  AAATTGTTCC TTAATTGTAT CACCCACACC ACAGATGTAT ATTGCTTCAT CTTCAGGCTG
  GATGTTGGAA ATGCTAAGGT AGCGATCAGC ACCAGAGCTG GATCCAGAGA AGCGATCAGG
  R
  ATCCCATCAC CTGTGCTGTG GCTTCCATCT TTCTTAAGCT CCATCACATA CTTAGGAGGC
  TTGAGTGGCT GTTGCTGATA CCATTCAATG GTGTACGTAC TGTGCTGACT ACTCAAGGTG
  CACGTGAGTT TTGCTGAGGC TCCCAGGGAG AAAGAGGCTG AAGATGACTG AGTGAGCACA
  AGTTGGGAGA AAGAACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48160113	NES12105073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32394194					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48160113	NES12105073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19060084 () rs orientation: forward

Symbol	Name	Function Class
Gm35545	predicted gene, 35545	within coordinates
Gm56600	predicted gene, 56600	within coordinates
Iglv3	immunoglobulin lambda variable 3	Coding-Synonymous
Rr512770	regulatory region 512770	262 bp proximal
Tssr137404	transcription start site region 137404	75 bp downstream
Tssr137405	transcription start site region 137405	50 bp downstream
Tssr140323	transcription start site region 140323	226 bp upstream
Tssr140324	transcription start site region 140324	361 bp downstream
Tssr140325	transcription start site region 140325	378 bp downstream
Tssr140326	transcription start site region 140326	473 bp downstream