rs32394935 SNP Detail

Summary

• ID
  rs32394935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30733662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCAGATA CCCAGGCTGA GCCTCTGAAT TCAGGTCCTC
  AAGCAAGCAC TTTGCCCACC AATACCTCCT AAACCCATGG ATCTCTTCTT AAGCTATAAA
  Y
  GCTTCCAGAA ATTGATTCCA GTCCGGTATT TGGTCACAAT GAGAACAGCA ACCCGCAGAG
  CTCTCGTGAA TAAAAGAAGT CAGGTCCAGA GGGCTGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss46140170	mCV22838224	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss60989554	NES16136179	PERLEGEN	MM_PANEL2	f	SNP			C	T		C	T
ss148696776	ENSMUSSNP6418109	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322138569	CHEV_7_31819256	CHEVERUD	SCREENING_POP	f	SNP					C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs32394935					SNP	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989554	NES16136179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30733662 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Rr644978	regulatory region 644978	within coordinates
Rr644979	regulatory region 644979	508 bp proximal
Rr644980	regulatory region 644980	766 bp proximal
Tssr2191	transcription start site region 2191	1223 bp downstream
Tssr65829	transcription start site region 65829	1314 bp downstream
Tssr65830	transcription start site region 65830	991 bp upstream