rs32395408 SNP Detail

Summary

• ID
  rs32395408
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCAACT GAAAGAACTT
  CAGCATCTGG CCTCAGATGG CAAGCCTGGG ATTAGAACTC GGCACTGAGT GCCACCACAG
  CCGGCATCTT GGTTTTTCTG GGAACTAGGC AGGGTAGCTG TTCTAGAGAA GGGACGGTAA
  GTGATTTGGA TTTGTTAAAA AGGCCACAAG TGTAAGGATG CAGGGCTTGG CTGTGTTTGG
  K
  GTTTGGGAAC AGATGGCAGT TGAAAGAGAA AGCCGTTAAC TATCCTGACA TAGAATATGT
  GGTCATGCAA ACTTTTTATA ATGAACTTTA GACCTCTGTG TGAGCCATCG CTAGTTTTTC
  AGGACATCCT GGGCGCTTCT GGAGCTGATC TGCAGCAACA GAAAACAGTT CGAAATAGGG
  ACTTTCCAAG ACCAGTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45643190	mCV22781783	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
ss147407594	ENSMUSSNP226209	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32395408					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	188 bp proximal
Rr398488	regulatory region 398488	310 bp upstream
Rr599660	regulatory region 599660	1068 bp distal
Rr599661	regulatory region 599661	within coordinates
Rr599662	regulatory region 599662	292 bp proximal
Rr599663	regulatory region 599663	434 bp proximal
Trappc3	trafficking protein particle complex 3	503 bp upstream
Tssr38986	transcription start site region 38986	1512 bp downstream
Tssr38987	transcription start site region 38987	467 bp upstream
Tssr38988	transcription start site region 38988	480 bp upstream