rs32395763 SNP Detail

Summary

• ID
  rs32395763
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172333581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTGTGG ATCTCTGGGA AGGTGGGCCA GGGCCCAGGG
  CTATTACCTG GCAGAGCAGG AGTTGGACTG GGCCAACTTT ACCAAAGAAA AAGGATAGCT
  K
  GTGGTTTTCC TGAGGGTGTG TGTGTGTGAG ATCAAGGATG GGCCATACTG CAGGTTGAGG
  TTGAAACAAT GAATTAAAGT TTGGATGCCA GGCTTGCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45142596	mCV24953250	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss120011643	PARCsnp_1.19900	PARC_SEQ	INBRED	f	SNP			G	T
ss120014578	PARCsnp_1.09947	PARC_SEQ	INBRED	f	SNP			G	T
ss146193936	ENSMUSSNP1965264	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32395763					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172333581 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	1980 bp distal
Rr29014	regulatory region 29014	1180 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	714 bp downstream
Tssr10220	transcription start site region 10220	243 bp downstream
Tssr10221	transcription start site region 10221	208 bp downstream
Tssr10222	transcription start site region 10222	115 bp downstream
Tssr10223	transcription start site region 10223	212 bp upstream
Tssr10224	transcription start site region 10224	558 bp upstream
Tssr10225	transcription start site region 10225	597 bp upstream
Tssr10226	transcription start site region 10226	610 bp upstream
Tssr10227	transcription start site region 10227	651 bp upstream
Tssr10228	transcription start site region 10228	703 bp upstream
Tssr10229	transcription start site region 10229	753 bp upstream
Tssr10230	transcription start site region 10230	774 bp upstream
Tssr10231	transcription start site region 10231	837 bp upstream
Tssr10232	transcription start site region 10232	881 bp upstream
Tssr10233	transcription start site region 10233	912 bp upstream
Tssr10234	transcription start site region 10234	971 bp upstream
Tssr15226	transcription start site region 15226	838 bp downstream
Tssr15227	transcription start site region 15227	931 bp downstream