rs32396943 SNP Detail

Summary

• ID
  rs32396943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78002525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAAGA GAAATACTTC
  CTTTCCTAGG ACACTGCCGA TCCCAAGAAA AGAACTGTGG TTGGCCAGCC TGGGTCATAT
  GTTTACCCAA TTGCAGATGC TGCCAAAGCT ATGTTAAGCC AGGGATAGTC TGTTCCAGAA
  TGGAAAACCA TCTCTTTGAT ACCAGAAGAA TAAAGGAGAT CCTAGCAGAG AGAAACAAGC
  R
  ATGTTCACTC CAGGTGGCTT CTTTGATCAC TAAATATTAT ACAGTCTCTT CCCTTTTATC
  TAAGCCAACC CACAGACCAC CAGGAAGCCT GTGTTTTCTC TGCGATACTG CTTGTGTGAT
  CACAGATTGT TTCTTCGCTG TCTTACCTGC CCTGCTCTAG CATTTACGTT TTGTCCATTC
  AAAGCCATAT CTTACCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45143106	mCV25069687	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss51286150	NES14517136	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		A	G	G	G	A	G	A	A	G
ss144739034	ENSMUSSNP2921525	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32396943					SNP	A	A	G	A	G	A	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286150	NES14517136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78002525 () rs orientation: forward

Symbol	Name	Function Class
Gm70314	predicted gene, 70314	1651 bp downstream