rs32397108 SNP Detail

Summary

• ID
  rs32397108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29893280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATCCCC TTAGGGCCAG TTTTCCGGTA TGGATCAGCC
  CAGACTAATT AAGAATTCTC AGGTCGGACT CTAAGTGAGT CTTTATTATT TGGCCCGCCC
  Y
  GCCCCTTCAG GCCCCGCCTT ACCTGATGGC GCTAATGACT CCGCCCAGGA TGCGCATGGC
  AGTTCCACCG CCTCCGCCAC CTCCTCCCAG TCCCATGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46141010	mCV24567911	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148668627	ENSMUSSNP2367990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322132187	CHEV_7_30978874	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32397108					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29893280 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	826 bp distal
Cpgi18782	CpG island 18782	within coordinates
Cpgi18783	CpG island 18783	624 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	within coordinates
Rr400233	regulatory region 400233	1180 bp upstream
Tssr65662	transcription start site region 65662	74 bp upstream
Tssr71696	transcription start site region 71696	925 bp upstream
Tssr71697	transcription start site region 71697	904 bp upstream
Tssr71698	transcription start site region 71698	873 bp upstream
Tssr71699	transcription start site region 71699	747 bp upstream
Tssr71700	transcription start site region 71700	712 bp upstream
Tssr71701	transcription start site region 71701	488 bp upstream
Tssr71702	transcription start site region 71702	36 bp upstream
Tssr71703	transcription start site region 71703	145 bp downstream
Tssr71704	transcription start site region 71704	239 bp downstream
Tssr71705	transcription start site region 71705	297 bp downstream
Tssr71706	transcription start site region 71706	1165 bp downstream
Tssr71707	transcription start site region 71707	1177 bp downstream
Tssr71708	transcription start site region 71708	1191 bp downstream
Tssr71709	transcription start site region 71709	1366 bp downstream
Tssr71710	transcription start site region 71710	1708 bp downstream