rs32398473 SNP Detail

Summary

• ID
  rs32398473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166080649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAAAGGCC ACCATTGAGC TTCCTCCTGA TTCTGCATGT
  CCCCATATAT ACATCACCCC TGCTTTCACA TGCATACATT CTTAGGGTGA AGGATTTCTG
  Y
  TTCCGAGTTC ACGGGCATTT TTCGGTCCTT CGGAGTTCTT TCTCCCTTCC TCTAGACAGA
  ATATGGGTGT CTGCTTCCTT ACTGCCACCA ACCCTCAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45142628	mCV23451380	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss146015790	ENSMUSSNP5399466	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32398473					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166080649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	718 bp proximal
Gm70596	predicted gene, 70596	1373 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	1059 bp upstream
Rr422555	regulatory region 422555	623 bp proximal
Rr422556	regulatory region 422556	1032 bp proximal
Rr422557	regulatory region 422557	1124 bp proximal
Tssr9868	transcription start site region 9868	970 bp upstream
Tssr9869	transcription start site region 9869	1015 bp upstream
Tssr9870	transcription start site region 9870	1079 bp upstream
Tssr9871	transcription start site region 9871	1106 bp upstream