rs32398580 SNP Detail

Summary

• ID
  rs32398580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GACTGCCCCC CCCACCCCAC
  Y
  CCTTCCCGTG TTATTTTGAG GCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46141322	mCV22944394	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148386811	ENSMUSSNP3158140	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss322110722	CHEV_7_17040305	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32398580					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1419 bp distal
Cpgi18378	CpG island 18378	53 bp proximal
Npas1	neuronal PAS domain protein 1	762 bp downstream
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1988 bp downstream
Tssr64614	transcription start site region 64614	1925 bp downstream