rs32398875 SNP Detail

Summary

• ID
  rs32398875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGGAG GTAATACGCG
  CGCGCATATG TGTGGTGGGT GGTGGCCAAC ATAGGGTTTC TGTAGACCAA GCTGGCTATG
  AACTCAGATT GCCTGGTGTG TGCCACAAGC TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTTTGAGAT AGGGTCTCCC ACTGAATCTG GAGCTCCCCC ACTGGGTTAG CCTAGCTGGC
  Y
  ATGGAACTCC AGGAGGCTTC TTGTTTCCTC TTTCCCAGCT TTGAAGTTTA AAACATTTAC
  CTTTTTCCGT GGGTGCTGGG TATCGAACTC AGATCATTGT GACAACTTCA CAAGCACTTT
  TCCTACTGAG GTATCTAACC AGCCCCCGAA CAAGCCTAGT GGCAAGTGAT AAAACTGTAT
  TTGTTGCCTA CCAACTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39398958	mCV22922451	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148197524	ENSMUSSNP2640638	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32398875					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213159 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	245 bp downstream
Cpgi7329	CpG island 7329	421 bp distal
Pla2g6	phospholipase A2, group VI	569 bp upstream
Rr404497	regulatory region 404497	437 bp downstream
Rr505593	regulatory region 505593	1006 bp distal
Rr505594	regulatory region 505594	1218 bp distal
Rr505595	regulatory region 505595	216 bp distal
Rr505596	regulatory region 505596	484 bp proximal
Rr505597	regulatory region 505597	625 bp proximal
Rr505598	regulatory region 505598	983 bp proximal
Rr505599	regulatory region 505599	1114 bp proximal
Tssr132082	transcription start site region 132082	1365 bp downstream
Tssr135328	transcription start site region 135328	809 bp upstream
Tssr135329	transcription start site region 135329	768 bp upstream
Tssr135330	transcription start site region 135330	698 bp upstream