rs32399853 SNP Detail

Summary

• ID
  rs32399853
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188710495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAGTTTG ATCCTCAGCA GAAGAGAACT GACTCCACTA
  AGTTACCCTC TGACCTCCAA CGTGTGTGCT CAGGCAAGAG TGCACGCACA CACAGCATTT
  K
  CATATGTGTG TGTACACAGA CACACATATT TGTTCAAATG TTTGTTGTTG AAATATTCAT
  GTTCCTAATT GTTTATAGTT AAATACAATG GCTAGGAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45143139	mCV24893762	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss320190027	CHEV_1_190802177	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32399853					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188710495 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			within coordinates
Rr425734	regulatory region 425734			1691 bp proximal
Rr425735	regulatory region 425735			1944 bp proximal
Tssr15705	transcription start site region 15705			106 bp downstream