rs32400678 SNP Detail

Summary

• ID
  rs32400678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48532247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAATTTT AGAGTTAGGA
  GACCATCTCG TCCAAAACCC TCATTTTGCA GAAGTGGAAA AAGAAGCTCG GCACCCCAAC
  TATGCCTTTC CGTGCTCGAG TTCTTTTGCA CCCGCCTTTG CCTTGTAACA TTTCCCCTTT
  TCTGATCACT CTGGGATCGC CCGGACCGCA TGTTGCCCAA CCCGCTTACA TCTAAGATTG
  Y
  GGTTTGGGCT CTTCCTGCTT TTAACTTTGT ATCTTCAGCC TCCAGAAGGA CTCGGGGCCA
  CGCAGTCCAA GTCCCATCAC TGAGCTTGGC CATCAGTAAG CTAACCATCA CTGACTTCAA
  GGGAGATACT GTGTTTTCCT GGCGGTGGTT AGGGCGTGGA TGCCATAACA CCGCCCCGGG
  ATCCAGGTGC AAAGGGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46141141	mCV23857808	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T	T
ss149208211	ENSMUSSNP1168185	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32400678					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48532247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	26 bp distal
E2f8	E2F transcription factor 8	903 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1252 bp downstream
Rr400336	regulatory region 400336	549 bp downstream
Rr646937	regulatory region 646937	1469 bp distal
Rr646938	regulatory region 646938	1115 bp distal
Rr646939	regulatory region 646939	914 bp distal
Rr646940	regulatory region 646940	413 bp distal
Tssr66768	transcription start site region 66768	1134 bp downstream
Tssr66769	transcription start site region 66769	633 bp downstream
Tssr72630	transcription start site region 72630	1509 bp upstream
Tssr72631	transcription start site region 72631	1469 bp upstream
Tssr72632	transcription start site region 72632	1449 bp upstream
Tssr72633	transcription start site region 72633	880 bp upstream
Tssr72634	transcription start site region 72634	828 bp upstream
Tssr72635	transcription start site region 72635	145 bp upstream
Tssr72636	transcription start site region 72636	836 bp downstream