rs32400682 SNP Detail

Summary

• ID
  rs32400682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18998961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACAGA GGGGCCAGTC
  ACATTCTCCT TAGATCCATA TAGTAGATAC AGGAACTGAT TGCAGCCTGT ACATGAATAT
  ACAGGGGTGT GGCTGTACAT GCATGACTGG GAGTGTTGCT CAGTGGTTAG AGACCCTGAC
  TAGAAACCCC AATGAGGGGC TGGGGGTGTG GCTCAATAGT AGCGTGTTTG CCCAGCTTGC
  Y
  GGCCCGGGCC CTTGGTTGAA TCCACAGTAC TATAAAAGAA GATAGGTTGA TAGGTGAGTA
  GTACCATGTA GTGAACAGAT AGGCAGGCCA CACACAGGAA GAGGCAGAAA AGAGATAAAG
  TAGGGTCCAT AAGGCTTGAG CTGGCGACCA GAGAGCTTGC TCGAGGTCCT GGGCTCAGCC
  TCTACAGCCT TAATCAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss46141145	mCV25048899	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs32400682					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18998961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr64812	transcription start site region 64812			1260 bp upstream
Tssr70883	transcription start site region 70883			553 bp upstream
Tssr70884	transcription start site region 70884			208 bp upstream
Tssr70885	transcription start site region 70885			953 bp downstream
Tssr70886	transcription start site region 70886			1506 bp downstream
Vasp	vasodilator-stimulated phosphoprotein			Intron
				Noncoding-Transcript-Variant