rs32400892 SNP Detail

Summary

• ID
  rs32400892
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG AATCTTAAGG CTTCCTATCA
  K
  ACCAGCAAGG GAAGTCAACA TACGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46141248	mCV24185497	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					G		G
ss51920259	NES14942869	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	G		G	G	T	T		G	T	T	G		G
ss145517527	ENSMUSSNP5242011	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
ss322347450	CHEV_7_107006745	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32400892					SNP	T	T	T	T	T	T	G	G	G	G	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920259	NES14942869	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	273 bp proximal
Rr400465	regulatory region 400465	593 bp upstream
Rr652012	regulatory region 652012	654 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	824 bp upstream
Tssr68078	transcription start site region 68078	888 bp upstream
Tssr73711	transcription start site region 73711	65 bp downstream
Tssr73712	transcription start site region 73712	637 bp downstream
Tssr73713	transcription start site region 73713	675 bp downstream
Tssr73714	transcription start site region 73714	757 bp downstream
Xrra1	X-ray radiation resistance associated 1	983 bp upstream