rs32401016 SNP Detail

Summary

• ID
  rs32401016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45290512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGCACAT GGCTTGCTAA GCCATAGGTG GTGACACCCA
  AGAGTGCATA TGTTGCAAAG GACTTAAACT GACCTGTAGG CAAAGCAGAG GAGCAAACTG
  R
  GACCTGAAGT GCATGTGTGT GTGGCAGGGG GACCAAGAGC TATCAAGCCT TGAAAATGTC
  ATTAGCCAGG ATTTGTTGCC AATGCAAAGA GTTCTGAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46140381	mCV25292071	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss61003174	NES16126596	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A		G	G	A	A	G	A	G	G	G
ss149139894	ENSMUSSNP355591	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32401016					SNP	G	G	G	A	A	A	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003174	NES16126596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45290512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19075	CpG island 19075			1235 bp distal
Cpgi19076	CpG island 19076			1950 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator			Intron
				mRNA-UTR
Rasip1	Ras interacting protein 1			1996 bp downstream
Rr646528	regulatory region 646528			1805 bp distal
Rr646529	regulatory region 646529			1085 bp distal
Rr646530	regulatory region 646530			579 bp distal
Tssr2250	transcription start site region 2250			1181 bp downstream
Tssr66600	transcription start site region 66600			1191 bp downstream
Tssr66601	transcription start site region 66601			1076 bp downstream
Tssr66602	transcription start site region 66602			649 bp downstream
Tssr66603	transcription start site region 66603			651 bp upstream