rs32404784 SNP Detail

Summary

• ID
  rs32404784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127187842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAGGA GAGGATGACG
  GATCCTCTGG ATCTGGAGTT ACAAGGGGTC GTGTACCGAG TACCCCGAAC AGCAGCAAAG
  GCTCCACCCC TCCATCTCCT AGTGCAACTG CGGGGTCAGT AACTATGGGA ACCGCCTGCT
  GGCCAATCAT TAAGAGAAAT ACAGTCCGTC GCGGGGTTGG AGGGGTGGGA CTAAAAGACT
  S
  GAGAGGAGGA ACCAAGAGCT ACCAATAGAA ACAGGAAATA AGTTTCGCCA CATCCGGAGC
  GGCTCTGACG CCTGCGCTGT GCGTCTGGCG GCCGGTGACG TCCGGTGAAA TCCAAGATGG
  TGGCGCTTGG CTGACCCTAC GGTAAGTGCG GACCCCCGTC CGGCGGGGGC GGGGTCCGGG
  AGATATGTCC AGGGGGACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46141570	mCV24902535	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					C
ss47263666	NES11575319	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C	C		C	C	C	C	C	G	C	C	G
ss145881303	ENSMUSSNP3110973	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32404784					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263666	NES11575319	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127187842 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	23 bp upstream
Cpgi19755	CpG island 19755	within coordinates
Gm44759	predicted gene 44759	1746 bp downstream
Rnf40	ring finger protein 40	94 bp upstream
Rr400653	regulatory region 400653	within coordinates
Tssr69263	transcription start site region 69263	44 bp upstream
Tssr69264	transcription start site region 69264	69 bp upstream
Tssr75012	transcription start site region 75012	528 bp upstream
Tssr75013	transcription start site region 75013	480 bp upstream
Tssr75014	transcription start site region 75014	452 bp upstream
Tssr75015	transcription start site region 75015	420 bp upstream
Tssr75016	transcription start site region 75016	392 bp upstream