rs32408279 SNP Detail

Summary

• ID
  rs32408279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGAGTG AGCCGAGAAC
  AGCCTCTGCC TGGCCTTAGT TTCCCTATCT CTACCACCTC TCCACCCCCA CCTCAGGTCA
  GATAAGAAGG GCGGAGTGTG AGGGCAGATC CCAGGGCCCT GGAATTGCCT CCCCTGAGGC
  CACATTTATT GGCCACCTGG TCCATCTGGT TCCCCAGGGC CCAAACAGCC ATTTGGCACA
  M
  ATTCCTGGCT GCACTGTCAC ACCCTGTGGC TGGGGATGGA GACACAGAGG TGGCCCAGAC
  AGACTGCCCT GCCACCAGGG AGCAGCTGGT CCAGCCTTGG GGGGGGGGGG CAGTGCCGAG
  GAGGCCACTG GCTGATGTAG GAAAACAACA GCTCAAATAT AGAGTCAGAT ACCACAGACC
  TTGGTTCAAA TTCTCCACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ
ss46144475	mCV25048923	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A		A
ss48162361	NES11801547	PERLEGEN	MM_PANEL2	f	SNP					C	A	A
ss148471809	ENSMUSSNP5756018	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ
rs32408279					SNP	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48162361	NES11801547	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999411 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	within coordinates
Rr167145	regulatory region 167145	589 bp proximal
Tssr64812	transcription start site region 64812	810 bp upstream
Tssr70883	transcription start site region 70883	1003 bp upstream
Tssr70884	transcription start site region 70884	658 bp upstream
Tssr70885	transcription start site region 70885	503 bp downstream
Tssr70886	transcription start site region 70886	1056 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates