rs32414489 SNP Detail

Summary

• ID
  rs32414489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31654104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCTGG TTCCTGCAGA
  GGCCAGAAGA GGGCACCAGG ACCCCTGGAA CTGGATCTAC AGAGAGTTGT GAGCTGCCCT
  GTGAGTGCTG GGAACTGAAT CTGGGTCCTC TACAAGAGCT TCAAGTGCTC TTAATCACTG
  AGCATCTCCA ACCCCTGGGG GGTAGGTTGT AGTCGTTCTT AGTAGACAGG CTTATAGTTC
  M
  GATGTCTGTG AATTGCCGTC ATTACCATGC AGCCACTAGT AAGAAGTCTT TGCTTATTTT
  GTTTTTGTAT GTTGGTATTC CTGTGCATAT GCCCACTGCC ACTGAAATTG TCCAAAACCT
  GTAATGTTGT TCTAGACAGT ATCTATCATA GCTAAGAGCT TTTGGCCTAA CCTTTTCTTT
  GTTTGAGACA AGGTCTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45730302	mCV23268653	ABI	CRAMUS_MOUSE	f	SNP	A	A	C						C
ss47664429	NES10261637	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C	C	C	C	C	C	C	C	C	C
ss148193010	ENSMUSSNP7136327	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32414489					SNP	A	A	C	A	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664429	NES10261637	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31654104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930566F21Rik	RIKEN cDNA 4930566F21 gene			1581 bp upstream
Cpgi15713	CpG island 15713			1406 bp distal
Gpn1	GPN-loop GTPase 1			Intron
				Noncoding-Transcript-Variant
Rr609208	regulatory region 609208			1997 bp distal
Rr609209	regulatory region 609209			1195 bp distal
Rr609210	regulatory region 609210			161 bp distal
Tssr1449	transcription start site region 1449			1953 bp downstream
Tssr45712	transcription start site region 45712			1982 bp downstream