rs32414715 SNP Detail

Summary

• ID
  rs32414715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19294611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTATA GTGAAACAGG
  GCTTCCCCAT GCAGTTCAAG CCCCCCCTAG AATGTCTACT CTATGATCCA GCCTTAGCCT
  CTAAGCGCTG GGCTCACAGC TGCAGACAGC CACACCAGGT TTCTTAACCA CTTCTGAATG
  GCCGCTCTGC TCCCCCCACC CCTTCCTGCT GCGATCTTGC CACAGTGGAC AACAGGCTGC
  Y
  GCCAGGGCCC AGTGGACTCT TCCTGTCCTC AGCACCAGTT CCAAGAAGTT CAGAACCCAA
  AACAAACCAC CCAGCCCTGG CAGGCTCCCC AAGCCAAGTC TAAATTAACC TCGGTCTCTT
  TGATAATTAC TAGTCAAACT GGCATTTATG GCGGGCTCCC AGTGTATCAT TTCCTGCAAC
  CAAGTCCCCC CCACCACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46156808	mCV25052342	ABI	CRAMUS_MOUSE	f	SNP	T	C			C
ss48163326	NES11822849	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C	C	T	C	T	T
ss148478829	ENSMUSSNP3713166	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32414715					SNP	T	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163326	NES11822849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19294611 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18499	CpG island 18499			451 bp proximal
Ppp1r37	protein phosphatase 1, regulatory subunit 37			Intron
				Noncoding-Transcript-Variant
Rr643186	regulatory region 643186			1862 bp distal
Rr643187	regulatory region 643187			1422 bp distal
Rr643188	regulatory region 643188			1800 bp proximal
Tssr70928	transcription start site region 70928			1436 bp downstream
Tssr70929	transcription start site region 70929			1482 bp downstream
Tssr70930	transcription start site region 70930			1515 bp downstream
Tssr70931	transcription start site region 70931			1691 bp downstream
Tssr70932	transcription start site region 70932			1726 bp downstream