rs32414721 SNP Detail

Summary

• ID
  rs32414721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19296606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTAGCC GCCCCCTCCC
  GCCCCCCACA AGCCAAGCTG TCAACAGTCA GGCTCCCGCA CATTCGTCAC AAGCCCAAGT
  AATTCGGGAA AGGATTCAAT ACAAATCCTA TAACCGCGGC CTGCGAGAGG GCTGTCAGCG
  GCTAAAGCCG TCTGAGTTCG TAAAAATAGA AGAATCGCCT CCACAAAATT GTCCTCTGAT
  Y
  TCTACGCGTC TACAAGAAAT GAGTAACTTA AAATATAAAA TACGGATCAG ATATTAATTA
  AAAAACCACT TGCTGGACAT GGTAGTGACT CGCCTTGTGA ACCGAGCCTT GGAGAGGCTG
  AAGGAGGAGG TTGCGAATTC GAGGCTAGGC TGGATTACAA AGGGAGCCTC AGACAAGCAG
  GTGCTACAGC AGGAGACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48163334	NES11822853	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	T	C	T	C	C
ss148478840	ENSMUSSNP3702587	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32414721					SNP	C	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163334	NES11822853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19296606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	within coordinates
Ppp1r37	protein phosphatase 1, regulatory subunit 37	within coordinates
Rr643188	regulatory region 643188	174 bp distal
Rr643189	regulatory region 643189	385 bp proximal
Rr643190	regulatory region 643190	1886 bp proximal
Rr643191	regulatory region 643191	1970 bp proximal
Tssr70928	transcription start site region 70928	515 bp upstream
Tssr70929	transcription start site region 70929	484 bp upstream
Tssr70930	transcription start site region 70930	433 bp upstream
Tssr70931	transcription start site region 70931	280 bp upstream
Tssr70932	transcription start site region 70932	244 bp upstream