rs32414864 SNP Detail

Summary

• ID
  rs32414864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19308379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGATCTCA GCCCGGGTAC
  AAAAAATGGA TTGCATTCCC ACAGAGTTCA CTTAGGCAGA AAGAAGAATG CAGCTTCCCC
  TTACTGCCTG GCACACAGGT GCTCTGCAAA TATCCGTGGA AAAGAGTGTC CTGCTTCAGA
  ATAGGTGTTG ATTGAATCAT GAAAGTATGG GTCCTGGTGC CTGCCTGTCT TGGCTACCAA
  R
  AAGGCCAAGT GGTCTAACCA GACTTAGTCC TATCTCACTG AAAGAGTATG GGGCTCTGTC
  CCAGAATGGG ATACTCTCTT AAAACCTACA GGTGTCCTCT TCTGGCAGCA TCTGAAGACA
  GCTACATATT ATAATAATAA TTAATAAATC TTAAAAAAAA ACCCTACATT CTCTTTTCAA
  GTTGAGGGAA CAAAATAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48163424	NES11821823	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G	A	G	G
ss148479134	ENSMUSSNP5267695	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32414864					SNP	G	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163424	NES11821823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19308379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	788 bp distal
Gemin7	gem nuclear organelle associated protein 7	1111 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1497 bp distal
Rr643194	regulatory region 643194	311 bp distal
Rr643195	regulatory region 643195	796 bp distal
Tssr70933	transcription start site region 70933	1091 bp upstream
Tssr70934	transcription start site region 70934	1077 bp upstream
Tssr70935	transcription start site region 70935	1051 bp upstream
Tssr70936	transcription start site region 70936	609 bp upstream