rs32414866 SNP Detail

Summary

• ID
  rs32414866
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19308399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAGTGTC CTGCTTCAGA ATAGGTGTTG ATTGAATCAT
  GAAAGTATGG GTCCTGGTGC CTGCCTGTCT TGGCTACCAA AAAGGCCAAG TGGTCTAACC
  W
  GACTTAGTCC TATCTCACTG AAAGAGTATG GGGCTCTGTC CCAGAATGGG ATACTCTCTT
  AAAACCTACA GGTGTCCTCT TCTGGCAGCA TCTGAAGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss48163426	NES11821824	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A		A	A	A	A
ss322117469	CHEV_7_20159823	CHEVERUD	SCREENING_POP	f	SNP					A					T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32414866					SNP	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163426	NES11821824	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19308399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	808 bp distal
Gemin7	gem nuclear organelle associated protein 7	1131 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1517 bp distal
Rr643194	regulatory region 643194	331 bp distal
Rr643195	regulatory region 643195	816 bp distal
Tssr70933	transcription start site region 70933	1111 bp upstream
Tssr70934	transcription start site region 70934	1097 bp upstream
Tssr70935	transcription start site region 70935	1071 bp upstream
Tssr70936	transcription start site region 70936	629 bp upstream