rs32414935 SNP Detail

Summary

• ID
  rs32414935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116851140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC AAAGAAACTG GAGGGACTAG
  R
  GAAGTGGAAT GAAGATCCAG TAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45644773	mCV24651361	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147282997	ENSMUSSNP214106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321278615	CHEV_4_116666548	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32414935					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116851140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14645	CpG island 14645	162 bp proximal
Cpgi14646	CpG island 14646	1362 bp proximal
Hectd3	HECT domain E3 ubiquitin protein ligase 3	1374 bp upstream
Rr367675	regulatory region 367675	306 bp upstream
Rr598014	regulatory region 598014	460 bp proximal
Rr598015	regulatory region 598015	1266 bp proximal
Tssr38587	transcription start site region 38587	1363 bp upstream
Tssr38588	transcription start site region 38588	1405 bp upstream
Tssr38589	transcription start site region 38589	1432 bp upstream
Tssr42936	transcription start site region 42936	1379 bp upstream
Tssr42937	transcription start site region 42937	309 bp upstream
Tssr42938	transcription start site region 42938	240 bp upstream
Tssr42939	transcription start site region 42939	189 bp upstream
Tssr42940	transcription start site region 42940	411 bp downstream
Tssr42941	transcription start site region 42941	431 bp downstream
Urod	uroporphyrinogen decarboxylase	Intron