rs32415348 SNP Detail

Summary

• ID
  rs32415348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31653258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACAGGCT TCTTGCTTAT
  GCAGATTTAT CCCTCTTATG CACTATCCCC GCTCACCTCT CTCTCATGCC CTCGGTGTGT
  GAAACCGTTG AATTGGTTTG AGAATGAGAC ATGACATTAG GTCGGGCTGT CACCTGACAC
  GTGAATCCTT TGGTTTCTTT TGTCAGAGTT TATAAGATTT GCTGTAATTC ACTTTATAGG
  M
  AGGTTCCTTC CATTTCCAAA GTTGTGTGTG TGGGGTGTGT GTGTAAGAAT ATGCACTGTT
  CTGAGGAGAG CTTTCTGATT GAGACTATCA AAAAGATTTA AGTATTGGTG TGATCCAAGG
  GAGCCTGAGG CAGAATATTT AGAGTTCAGA GTCAGTCCGA CTTGCATAGC CAGACCTCGT
  TTGGAAAAGA AAAGGTGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47664438	NES10261775	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32415348					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664438	NES10261775	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31653258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930566F21Rik	RIKEN cDNA 4930566F21 gene			735 bp upstream
Cpgi15713	CpG island 15713			560 bp distal
Gpn1	GPN-loop GTPase 1			Intron
				Noncoding-Transcript-Variant
Rr399021	regulatory region 399021			1160 bp downstream
Rr609208	regulatory region 609208			1151 bp distal
Rr609209	regulatory region 609209			349 bp distal
Rr609210	regulatory region 609210			664 bp proximal
Tssr1449	transcription start site region 1449			1107 bp downstream
Tssr45712	transcription start site region 45712			1136 bp downstream