rs32415997 SNP Detail

Summary

• ID
  rs32415997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGCTGG GATTACAGAC
  TTGGGTCACT GTGCTTAGCT AGGAACTGCT TCCAGATATC ATGTACTGAA AGATTTCTAG
  TGACAAGGGG CTGAAACAGG GGACACAGAC TCCCTCACTA GACGGCTAGA GCAAACTGAG
  GAAGGGTAAA ACTTCAACGC TAACCACCAA CCTGCAGCAT TTGCTCCCGG GCACTGGCAC
  R
  GCACTGGCAC ACAAGTGTGA CCACCACCAC CACTCCCAGT CCCCTCCGTG GGAAGACAAA
  CCTGCAGGTG ACTGCAGTGG ACCACATCAC CAAGAGGGAA CCTTGAAACC TAGTGTAAGC
  CAAGGCCCTG TCTAGGCCTT TTCTAGTAAA AAGCCATCCT TGCCCACCTC GGGTCAATTT
  CTTATGCAGA GATGAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163342	NES11822657	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32415997					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163342	NES11822657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1024 bp distal
Gemin7	gem nuclear organelle associated protein 7	1116 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	757 bp upstream
Rr643188	regulatory region 643188	1326 bp distal
Rr643189	regulatory region 643189	267 bp distal
Rr643190	regulatory region 643190	734 bp proximal
Rr643191	regulatory region 643191	818 bp proximal
Tssr70928	transcription start site region 70928	1667 bp upstream
Tssr70929	transcription start site region 70929	1636 bp upstream
Tssr70930	transcription start site region 70930	1585 bp upstream
Tssr70931	transcription start site region 70931	1432 bp upstream
Tssr70932	transcription start site region 70932	1396 bp upstream