rs32415999 SNP Detail

Summary

• ID
  rs32415999
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCACTG TGCTTAGCTA
  GGAACTGCTT CCAGATATCA TGTACTGAAA GATTTCTAGT GACAAGGGGC TGAAACAGGG
  GACACAGACT CCCTCACTAG ACGGCTAGAG CAAACTGAGG AAGGGTAAAA CTTCAACGCT
  AACCACCAAC CTGCAGCATT TGCTCCCGGG CACTGGCACG GCACTGGCAC ACAAGTGTGA
  M
  CACCACCACC ACTCCCAGTC CCCTCCGTGG GAAGACAAAC CTGCAGGTGA CTGCAGTGGA
  CCACATCACC AAGAGGGAAC CTTGAAACCT AGTGTAAGCC AAGGCCCTGT CTAGGCCTTT
  TCTAGTAAAA AGCCATCCTT GCCCACCTCG GGTCAATTTC TTATGCAGAG ATGAATGTCA
  GCCATTTGGG GAGGATGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163344	NES11822658	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	A	C	C	C	A	A	A	A	C
ss148478870	ENSMUSSNP1540846	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32415999					SNP	A	A	C	C	C	A	A	C	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163344	NES11822658	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1045 bp distal
Gemin7	gem nuclear organelle associated protein 7	1095 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	778 bp upstream
Rr643188	regulatory region 643188	1347 bp distal
Rr643189	regulatory region 643189	288 bp distal
Rr643190	regulatory region 643190	713 bp proximal
Rr643191	regulatory region 643191	797 bp proximal
Tssr70928	transcription start site region 70928	1688 bp upstream
Tssr70929	transcription start site region 70929	1657 bp upstream
Tssr70930	transcription start site region 70930	1606 bp upstream
Tssr70931	transcription start site region 70931	1453 bp upstream
Tssr70932	transcription start site region 70932	1417 bp upstream