rs32416001 SNP Detail

Summary

• ID
  rs32416001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTGAAA GATTTCTAGT
  GACAAGGGGC TGAAACAGGG GACACAGACT CCCTCACTAG ACGGCTAGAG CAAACTGAGG
  AAGGGTAAAA CTTCAACGCT AACCACCAAC CTGCAGCATT TGCTCCCGGG CACTGGCACG
  GCACTGGCAC ACAAGTGTGA CCACCACCAC CACTCCCAGT CCCCTCCGTG GGAAGACAAA
  Y
  CTGCAGGTGA CTGCAGTGGA CCACATCACC AAGAGGGAAC CTTGAAACCT AGTGTAAGCC
  AAGGCCCTGT CTAGGCCTTT TCTAGTAAAA AGCCATCCTT GCCCACCTCG GGTCAATTTC
  TTATGCAGAG ATGAATGTCA GCCATTTGGG GAGGATGCCA GGAGCAGTGC AAGCCCTATA
  CTTTTATCTG GACGCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163346	NES11822659	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	T	T	T	T	C
ss148478877	ENSMUSSNP5251348	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32416001					SNP	T	T	C	C	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163346	NES11822659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1085 bp distal
Gemin7	gem nuclear organelle associated protein 7	1055 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	818 bp upstream
Rr643188	regulatory region 643188	1387 bp distal
Rr643189	regulatory region 643189	328 bp distal
Rr643190	regulatory region 643190	673 bp proximal
Rr643191	regulatory region 643191	757 bp proximal
Tssr70928	transcription start site region 70928	1728 bp upstream
Tssr70929	transcription start site region 70929	1697 bp upstream
Tssr70930	transcription start site region 70930	1646 bp upstream
Tssr70931	transcription start site region 70931	1493 bp upstream
Tssr70932	transcription start site region 70932	1457 bp upstream