rs32416044 SNP Detail

Summary

• ID
  rs32416044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31652791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCTTGC TTTCACGGAG
  TGAGTGTTTT AGTGGAGGAG ACAGAGGAAG AAAACCCTTG GAGGGGCAGA GTTAGCGAAG
  CCGTGACGGA GAATAGGGAG ACAGGTACTG GAACTAGATG GCTTTTTAAA CTCTTCAGTG
  TTGAACACGC TGAGGGAAGA AGGAGATTGT TACAGATTTT ATAAGCATGG TCAGTAAAGG
  R
  ATGGGAATTC TCGGGGCCCG TTCCTATCCT TTGGTCATCA CCCTCCAACC CTGGCTCCTT
  GTTTTTGCAG AGGCTCACAG GACACCTGCA CAACAAAGGC TGTCCACCGT ATGTAATCAA
  CCTGGACCCA GCTGTGCATG AAGTCCCCTT TCCCGCCAAT ATTGGTGAGT GCCTGCCTGC
  CTGCTTGCTT GATTTCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47664444	NES10261773	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32416044					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664444	NES10261773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31652791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930566F21Rik	RIKEN cDNA 4930566F21 gene			268 bp upstream
Cpgi15713	CpG island 15713			93 bp distal
Gpn1	GPN-loop GTPase 1			Intron
				Noncoding-Transcript-Variant
Rr399021	regulatory region 399021			693 bp downstream
Rr609208	regulatory region 609208			684 bp distal
Rr609209	regulatory region 609209			within coordinates
Rr609210	regulatory region 609210			1131 bp proximal
Tssr1449	transcription start site region 1449			640 bp downstream
Tssr45712	transcription start site region 45712			669 bp downstream