rs32416047 SNP Detail

Summary

• ID
  rs32416047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31652408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAACTAC CTTTGTACAG
  GTGACGTGCA CCGTGCAGAA GCGGTAGTGG CGCCTCAGGC CCGGGAAGAA GGGAGGAAGT
  TGTCTGGGGA ATCTGCGGGT CCGGGCGCGT GGTTTTCTCG AGCTGTCCTC TGACTCCTTT
  CCTTCCCGAA GCCTCGAACC CTAGCCTGGG TCACTTGAGG CCGGCTCCTG GGCAACCTTA
  R
  TGCACACTTG GTACAGCTGA ACTTGTCTTG CTGCGAATTG GCAGCTTTCC GAAGGCCCGG
  GCCTAAAGAG TAGGGGAGTG TAACGTCTAC TACTCTGGTT TGCGTGAAGA GTTGTGAAAG
  AATCACTTCG TTCGACCTAC CACGTTCTAA GCTCTGAGAG TACAGCGGCA ATGAGATCGA
  CAGGGTTCTT GCTTTCACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47664447	NES10261865	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32416047					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664447	NES10261865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31652408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930566F21Rik	RIKEN cDNA 4930566F21 gene			within coordinates
Cpgi15713	CpG island 15713			within coordinates
Gpn1	GPN-loop GTPase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr399021	regulatory region 399021			310 bp downstream
Rr609208	regulatory region 609208			301 bp distal
Rr609209	regulatory region 609209			81 bp proximal
Rr609210	regulatory region 609210			1514 bp proximal
Tssr1449	transcription start site region 1449			257 bp downstream
Tssr45712	transcription start site region 45712			286 bp downstream